PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G128000.3
Common NameB456_009G128000, LOC105767848
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 301aa    MW: 34462.4 Da    PI: 8.9672
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G128000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-052953123
                        EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                        ++C   dC+ s++rk++L+rH+  H
  Gorai.009G128000.3 29 FVCLvdDCHASYRRKDHLNRHLLQH 53
                        899999***************9887 PP

2zf-C2H212.60.000435883123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                        ++Cp   C+  F  + n+krH +  H
  Gorai.009G128000.3 58 FSCPieTCNSKFAFQGNMKRHVKEfH 83
                        89********************9988 PP

3zf-C2H2193.9e-0698122123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y C+   Cgk+F+ +s L++H  +H
  Gorai.009G128000.3  98 YICQevGCGKVFKFSSKLRKHEDSH 122
                         89*******************9888 PP

4zf-C2H2163.4e-05189213223
                         EET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                         kC    C  +Fs+ksnL++H +  H
  Gorai.009G128000.3 189 KCDfgGCLHTFSTKSNLRQHVKAvH 213
                         688889**************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.12E-62655No hitNo description
Gene3DG3DSA:3.30.160.608.0E-92655IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0252953IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.0162958IPR007087Zinc finger, C2H2
PROSITE patternPS0002803153IPR007087Zinc finger, C2H2
SuperFamilySSF576678.67E-55684No hitNo description
Gene3DG3DSA:3.30.160.603.8E-55684IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.165883IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5985888IPR007087Zinc finger, C2H2
PROSITE patternPS0002806083IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-893122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.28E-594122No hitNo description
PROSITE profilePS5015710.92898127IPR007087Zinc finger, C2H2
SMARTSM003550.01898122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100122IPR007087Zinc finger, C2H2
SMARTSM003559.9130155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132155IPR007087Zinc finger, C2H2
SMARTSM0035518158179IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-5169210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.45E-7170224No hitNo description
SMARTSM003550.0017188213IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.614188218IPR007087Zinc finger, C2H2
PROSITE patternPS000280190213IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-5212241IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.8219245IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280221245IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNQYQVGRPP EKLHQVSLGH TVWYLKRPFV CLVDDCHASY RRKDHLNRHL LQHQGKLFSC  60
PIETCNSKFA FQGNMKRHVK EFHDEDSSST DAASQKQYIC QEVGCGKVFK FSSKLRKHED  120
SHVKLDSVEA FCSEPSCLKY FSNEQCLKAH VQSCHQYINC QICGAKQLKK NIKRHLRSHE  180
SGVASERIKC DFGGCLHTFS TKSNLRQHVK AVHEELKPFA CSFSGCGMRF SYKHVRDNHE  240
KSALHVYVPG DFIESDEQFQ SRPRGGRKRT CPTVEMLIRK RVAPPQMDTM MDPGPIQGCS  300
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442878.10.0PREDICTED: transcription factor IIIA-like isoform X3
SwissprotQ84MZ41e-121TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0D2TPF50.0A0A0D2TPF5_G
STRINGVIT_08s0040g00240.t011e-141(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-122transcription factor IIIA
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]